The former Brazilian leader has been taken into custody after authorities concluded he posed a concrete flight risk while under home confinement.
The former head of state was sentenced of planning a military coup in the ninth month and handed more than over two decades in jail, but he continued under house arrest pending appeals.
Brazilian Supreme Court Justice the presiding justice said the decision to arrest the elderly politician was a precautionary step after fresh information emerged.
This included attempting to break his ankle monitor and a summons to a demonstration that could enable a potential flight.
In a document approving the detention, the judge said information from the facility tracking the former president's confinement suggested the ex-president's aim to disable the electronic ankle bracelet to guarantee victory in his getaway".
This, it said, would be assisted by the chaos caused by the gathering called by his offspring.
His son, his son Flávio, who serves as a congressional representative, called for a assembly of his backers near the former president's residence to take place on Saturday evening.
Flávio Bolsonaro wrote on online platforms on the previous day: Will you battle for your nation, or observe everything from your mobile device there on your couch? I invite you to fight with us."
He said the gathering would be so backers could "pray for his physical condition and for the return of democracy in our nation."
Part of the judge's ruling was the possibility of his transfer to diplomatic missions near the residence, considering that the inquiries revealed a history of planning to seek refuge through a diplomatic representation", a statement said.
The judicial paperwork emphasizes that the American diplomatic mission in the federal district, Brazil's capital, is positioned around 13km from his dwelling.
The former president's legal troubles have generated frustration from fellow conservative nationalist American leader Donald Trump, prompting him to implement a 50% tariff on imports of Brazilian goods.
He is being held in a Federal Police station in Brazil's capital city and will have a imprisonment assessment on the next day.
It was only on last Friday that the former president's lawyers asked the High Court to allow him to fulfill his full incarceration period under domestic detention, with electronic monitoring.
They also petitioned that he be allowed to leave his home for healthcare, saying he needed frequent medical attention for lung conditions and other illnesses.
The former president was determined responsible of leading a plot aimed at keeping him in power after he lost the 2022 election to his left-wing rival, Luiz Inácio Lula da Silva.
Top judicial officials said that he was aware of a plot which encompassed plans to murder the current president and his VP candidate, Alckmin, and to imprison and murder the presiding judge - the High Court judge who has been presiding over his judicial proceedings.
The conspiracy was thwarted because it didn't receive the backing of the military leaders. The current president was sworn in without issue on January 1st, 2023.
But a week later, on the eighth of January, thousands of Bolsonaro supporters attacked and damaged public facilities in the national capital, the capital city.
The police intervened and around approximately 1,500 persons were arrested.
The magistrates found that the rioters had been provoked by Bolsonaro whose strategy, they said, was for the country's army to intervene, reestablish control and bring him back to power.
At the period, the legal team called the over 27-year sentence unreasonably severe".
He was also banned from campaigning for office until twenty-sixty - eight years after the conclusion of his imprisonment.
The former president called the court case a targeted investigation" and said it was intended to stop him competing in the 2026 presidential election.